miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|90456152|gb|DY918031.1|DY918031 GTTTCTCGATCTGTTTCTCTCCCTCAAGGCTTCAGGAAAAAAAAATCAATAATTAAGGATAATGACATCAAAAACAATAA
GGAGAAGACTCCATCATGGGGATGTTGATGGTAAAAAGCACGAGCATTTAGTAGGTGCAGATTTAGACGACCTACAAGAG
CCTTTACTTGGGAAAAATGATGACTATAAAGCTAAGCAGTTGGAGGTGCAAAAGCGGGAAGGTAATTTGTATGATGCAAA
AAGTAAAGAGCGCCTCCACTGGACGTTTCTATTCTCTAACATAATTTCCGAATGGGCACAATGGTTAGCAAGAGTACTAC
TCGGATCCGGATCGTTTATTGTACGCGCCTTGACTTTACCTTCAACGGTAGGAAGTGTACCGACAAAGAAGCTTCTTCCG
TCATCACTTACTCCGTTACAGGAATCAAGACTCAAAGCTTTGCAGAAAAGATTGGAGGTCCCGTTTGATGGTTCTTCTTT
GGAGCACCAAGATGCACTAAGGACGTTATGGAGGTCAGCGTATCCAAACCGAGATCTCCCAGGACTTAAATCGGAGGCTT
GGAAAGATATGGGGTGGCAAGGAAATGATCCTTCTACCGACTTCAGGGGTGGAGGGTTCATATCTCTAGAGAATCTTATC
TTCTTTGCCAACACATATCCGGAAGCTTTTCAAGACCTTCTAAACAAAAGAGAAGGAGATAGAGCTGAATGGGAGTATCC
TTTTGCGGTAGCGGGCATCAATATTTCTTTCATGTTGGTGCAAATGTTGGATATTCAGTCAGGATTACCAACATCTTCAT
CGGGGGTGCGCTTCTTGGAATTTCTTAGTAATGATGAATCGGCTTTTGATGAGCTTTATTGTGTTGCTTTTAAACTCATG
GATGTT




Most similar to sp|Q54YW1|ELMOA_DICDI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A
           OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
          Length = 977

 Score =  106 bits (264), Expect = 3e-22
 Identities = 69/195 (35%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
 Frame = +2

Query: 356 LPSTVGSVPTKKLLPSSLTPLQESRLKALQKRLEVPFDGSSLEHQDALRTLWRSAYPNRD 535
           L   V S+     L   L   Q  R + +  R  V F+  S EH   L  LW   YP   
Sbjct: 341 LKKLVESIIVAPELKRQLYIYQRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVK 400

Query: 536 LPGLKSEAWKDMGWQGNDPSTDFRGGGFISLENLIFFANTYPEAFQDLLNKREGDRAEWE 715
           L    SE WK MG+QG DP TDFR  G   L+NLI+FA  Y E F+ ++N  + DR E E
Sbjct: 401 LESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNS-QIDRKERE 459

Query: 716 YPFAVAGINISFMLVQMLDIQSGLP----------------TSSSGVRFLEFLS---NDE 838
           YP A AGI ++F L   +  + G P                TS++ +  L F     +  
Sbjct: 460 YPTATAGIVLTFELYNSI-FKMGTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHP 518

Query: 839 SAFDELYCVAFKLMD 883
            AF+E+YC  F+++D
Sbjct: 519 HAFEEVYCTTFQILD 533